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rs214298787 SNP Detail
Summary
  • ID
    rs214298787
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:19430157 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTGCGGGTG GCTCAGTGGT
AGAGCCCCTG CCTAGAATCC CCCAGTGAGG GGCTGTGGGC GTGGCTCAGT GGTAGATCAC
TTGTTCTTTT ATGTTGCTAG GTCCTAGGCT TCATTTCTAT TGCTGCAAAA CCACCTCCCT
CTACAGATAG TGACAGGGCC ATGGAATGTG TGCTAGGTAA GGCAAAAAAC AATAAACTGA
R
GCTGAAGCTG ATTGGAATCA CTCACAGAGA CTCAGAATGT GCTCGGAGAA TCTTTATTAA
GCAAGGGCCA CCAGAGGGCC AGAGAGGTGC TTGAGACAGG GCCACCTGGC TGGATATGGA
TGTTGTTGCA GGACAGGAGA AGGATACTCA TTGATTCTCC TGGGCCACTG GGGTGATGAT
GGGGTTGGTA GCCACAGAGG                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754792 MGP_WTSI_7_20281581 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214298787 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754792 MGP_WTSI_7_20281581 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19430157 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 289 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1539 bp proximal
Gm71725 predicted gene, 71725 886 bp upstream
Rr155346 regulatory region 155346 within coordinates
Rr167194 regulatory region 167194 243 bp proximal
Tssr2112 transcription start site region 2112 219 bp upstream
Tssr2113 transcription start site region 2113 244 bp upstream
Tssr2114 transcription start site region 2114 359 bp upstream
Tssr2115 transcription start site region 2115 395 bp upstream
Tssr2116 transcription start site region 2116 470 bp upstream
Tssr2117 transcription start site region 2117 492 bp upstream
Tssr2118 transcription start site region 2118 599 bp upstream
Tssr2119 transcription start site region 2119 608 bp downstream
Tssr2120 transcription start site region 2120 671 bp upstream
Tssr2121 transcription start site region 2121 703 bp upstream
Tssr2122 transcription start site region 2122 1423 bp downstream
Tssr64880 transcription start site region 64880 36 bp upstream
Tssr64881 transcription start site region 64881 88 bp upstream
Tssr64882 transcription start site region 64882 132 bp upstream
Tssr64883 transcription start site region 64883 170 bp upstream
Tssr64884 transcription start site region 64884 197 bp upstream
Tssr64885 transcription start site region 64885 276 bp upstream
Tssr64886 transcription start site region 64886 297 bp upstream
Tssr64887 transcription start site region 64887 329 bp upstream
Tssr64888 transcription start site region 64888 548 bp upstream
Tssr64889 transcription start site region 64889 642 bp upstream
Tssr64890 transcription start site region 64890 688 bp upstream
Tssr64891 transcription start site region 64891 711 bp upstream
Tssr64892 transcription start site region 64892 744 bp upstream
Tssr64893 transcription start site region 64893 779 bp upstream
Tssr64894 transcription start site region 64894 1233 bp upstream
Tssr64895 transcription start site region 64895 1329 bp upstream
Tssr64896 transcription start site region 64896 1355 bp upstream
Tssr70973 transcription start site region 70973 60 bp downstream
Tssr70974 transcription start site region 70974 106 bp downstream
Tssr70975 transcription start site region 70975 134 bp downstream
Tssr70976 transcription start site region 70976 169 bp downstream
Tssr70977 transcription start site region 70977 217 bp downstream
Tssr70978 transcription start site region 70978 232 bp downstream
Tssr70979 transcription start site region 70979 256 bp downstream
Tssr70980 transcription start site region 70980 266 bp downstream
Tssr70981 transcription start site region 70981 287 bp downstream
Tssr70982 transcription start site region 70982 301 bp downstream
Tssr70983 transcription start site region 70983 334 bp downstream
Tssr70984 transcription start site region 70984 351 bp downstream
Tssr70985 transcription start site region 70985 416 bp downstream
Tssr70986 transcription start site region 70986 449 bp downstream
Tssr70987 transcription start site region 70987 479 bp downstream
Tssr70988 transcription start site region 70988 523 bp downstream
Tssr70989 transcription start site region 70989 562 bp downstream
Tssr70990 transcription start site region 70990 574 bp downstream
Tssr70991 transcription start site region 70991 619 bp downstream
Tssr70992 transcription start site region 70992 627 bp downstream
Tssr70993 transcription start site region 70993 636 bp downstream
Tssr70994 transcription start site region 70994 677 bp downstream
Tssr70995 transcription start site region 70995 682 bp downstream
Tssr70996 transcription start site region 70996 715 bp downstream
Tssr70997 transcription start site region 70997 749 bp downstream
Tssr70998 transcription start site region 70998 811 bp downstream
Tssr70999 transcription start site region 70999 829 bp downstream
Tssr71000 transcription start site region 71000 1272 bp downstream
Tssr71001 transcription start site region 71001 1302 bp downstream
Tssr71002 transcription start site region 71002 1362 bp downstream
Tssr71003 transcription start site region 71003 1380 bp downstream
Tssr71004 transcription start site region 71004 1408 bp downstream
Tssr71005 transcription start site region 71005 1759 bp downstream
Tssr71006 transcription start site region 71006 1792 bp downstream
Tssr71007 transcription start site region 71007 1850 bp downstream
Tssr71008 transcription start site region 71008 1956 bp downstream
Tssr71009 transcription start site region 71009 1974 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory