rs214312729 SNP Detail

Summary

• ID
  rs214312729
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGGACA GAATGTGTCT
  ACATTCAAGC TTACTGTTCT GTCTTCTGAG ACAGAGTTAC TATGTAACCT TTGCAGGCCT
  CAAACTCTAG ATCCTGCTGC CTCAATTTCC CAAGTGCCAG GTTGTGCTCA GTTTTTTTTT
  GTTGTTTTTT TTTTGTTGTT TTTGTTTTGT TTTTTTCGAG ACAGGGTTTC TCTGTATATC
  A
  GTTTTTTATT ATTATAGTTT GAGACAGGGT CTCAAGGATC GGCCTGCCTC AGCCCGCGGA
  GTGCTGGGAT TAACAACATG ACTTGTGCTC ATTATTATTA TTATTGTTAT TATTATTATT
  ATTATTATTA TTATTATTAT TATTATTATT ATTATTATTA TTTTCGAGAC AGGGTTTCTC
  TGTGAAGTCC TGGCTGTCCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	WSB/EiJ	ZALENDE/EiJ
ss382200150	MGP_WTSI_10_127649647	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	WSB/EiJ	ZALENDE/EiJ
rs214312729					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382200150	MGP_WTSI_10_127649647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	537 bp distal
Cpgi2388	CpG island 2388	488 bp proximal
Rr224447	regulatory region 224447	259 bp distal
Rr224448	regulatory region 224448	140 bp proximal
Rr402345	regulatory region 402345	580 bp downstream
Rr402346	regulatory region 402346	213 bp upstream
Spryd4	SPRY domain containing 4	797 bp upstream
Tssr99849	transcription start site region 99849	816 bp upstream
Tssr99850	transcription start site region 99850	768 bp upstream