rs214315004 SNP Detail

Summary

• ID
  rs214315004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102523824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCAATA CGATTCTATG
  CATTAAGTGA AATTCCATGA CTCTAGAAGT CAGTATGGAG GGGGTATAGA TGGGCTGTCT
  CAGTCTTATA GGCTGAGTGA TGGACACTGC ATTTTAGCAC TGAATCAATG AAGATTCGAA
  TTTCTCTAAG TAGAAGTGGG CTTGGGATAG GTCTGAAAGT ATCTGGGCCT GGGGCTAGGA
  Y
  TGGGCTGGGG CAGGGCTGGA CTGGATTGGG TTGGTTGGGT GGGGCAGGGG CAGGGGCAGG
  GGTAGGGGCT GGGGCTGGGG CTGGGGCAGG GGCTGGGGCA GGGGCAGGGG CTGGGGCTGG
  GGCAGGGGCT GGGGCTGGGG CTGGGGCAGG GGCTGGGGCT GGGCCTGGGG CTGGGGCAGC
  AATAGCAGCA GCACTATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404206059	MGP_WTSI_X_100675557	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214315004					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206059	MGP_WTSI_X_100675557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102523824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	1859 bp proximal
Gm26992	predicted gene, 26992	within coordinates
Gm55587	predicted gene, 55587	728 bp upstream
Rr366651	regulatory region 366651	1976 bp downstream
Rr693003	regulatory region 693003	1069 bp proximal
Rr693004	regulatory region 693004	1512 bp proximal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr163949	transcription start site region 163949	292 bp downstream
Tssr163950	transcription start site region 163950	345 bp downstream
Tssr163951	transcription start site region 163951	475 bp downstream
Tssr163952	transcription start site region 163952	565 bp downstream
Tssr163953	transcription start site region 163953	665 bp downstream
Xist	inactive X specific transcripts	within coordinates