rs214319725 SNP Detail

Summary

• ID
  rs214319725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147215840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGGAAGCC CCCCAGCCCG
  GGAGGCAAGG CCACGGATGC ACTCGGTAGC TTACACGGAC TGCCCATCCC AGCCTCGACC
  TCCTAGGGGC TGTCCTCTCA CAGAGCCACA GCCCGGTTCA GAGGAGCCGG CCGGGAGTGC
  AGCTCAGCTC ATTCGACCTC TGCACCTCTG CGCTAGCAGC ATCCTGGAGT TGGGGCCCCG
  R
  CATTGCTTTG GTCTCAACAG TTCCGCCGGT GCTTCCTTCA GGAAACCCTG GAATTTTTTA
  GGTCTTTCCG AGTCTTGGTT TTAGATGGCT GCGTTCTCCT AACCTTCCTA GTTCGGAGAG
  AGACTCCTGC ATCCACCTCA ATTTATTTTT GTTTTGTCTT TTCCCATCCA TATCCTTCCT
  CTCTCTTCTT CTTCCTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320549998	CHEV_2_147199656	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214319725					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147215840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	23 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	57 bp downstream
Tssr20632	transcription start site region 20632	1 bp downstream
Tssr20633	transcription start site region 20633	27 bp upstream
Tssr20634	transcription start site region 20634	115 bp upstream
Tssr20635	transcription start site region 20635	1608 bp upstream