rs214321509 SNP Detail

Summary

• ID
  rs214321509
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77106479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAATAGC AGGTTGGAGC TTTCCAACTC
  AGGGTCCAGC TCTCTGTGCC CGCCCCTTCC CTCAGCATCT CAGGTACAGT GACTGACTTT
  AGGCAGGTTG TAGAGGAAGG AAGCCTGAGG CTACTACGAA GTTTCCAGTG TTTACCACCG
  S
  GGGGAAAAAT CTTTCTTAGG AAAAGTCTGG TCGTTAACCC TGAGGCCCTT TATGATGAGG
  AGGGTGGGGA AGCTCATTAA GACGGAGCCC TCTTGAGGGC CAGGTCCAAG CAGGAGGGCT
  GGTCTCCCGG GTCTAGCCCA GAGAAAGCGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755103	CHEV_11_77029155	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214321509					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77106479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3303	CpG island 3303	40 bp proximal
Gm45027	predicted gene 45027	within coordinates
Rr402749	regulatory region 402749	1155 bp downstream
Rr402750	regulatory region 402750	608 bp downstream
Ssh2	slingshot protein phosphatase 2	634 bp upstream
Tssr103125	transcription start site region 103125	518 bp upstream
Tssr103126	transcription start site region 103126	527 bp upstream