rs214327553 SNP Detail

Summary

• ID
  rs214327553
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44883565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCGGCG TTGGGAGTCT
  CGGTCGCGGA CAGCCCTAGT CCTGAGGGTA AAGACCCCCT TCACCGTCTC CAGGGACGGC
  GGGGCTTCAC CTCGGAGCCA CCGGCGACGG CCTAGGGTCG CGTCGGCCCC GGGGACAGGG
  GCGGGCACGC GGGCCGGCGA CCACGAGGCC GCGAGCTTTC GCCGGGAGGC TGCCCCAGCC
  S
  CGTCTGCCTC GCGCGTGGGG TCGCGTGCGG CCGCGGGCCG GCTTGGAGCC GTGACCTCGG
  ACCACCCCGG CGGCCGAGCG GCCGCCCGCT TGCTCGGCAC ACGGGCGCTT GTCCTGAGGT
  GACACCGCCG GCAACGGCTG AAGCAAGCGG GCGCTGCCGA TCAGCGAGTT CGCACCGAGC
  GAGGATCCCT CTTGGTGCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388465228	MGP_WTSI_13_44825458	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214327553					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465228	MGP_WTSI_13_44825458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44883565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	within coordinates
Gm60383	predicted gene, 60383	within coordinates
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr369688	regulatory region 369688	518 bp upstream
Rr403743	regulatory region 403743	999 bp upstream
Rr478586	regulatory region 478586	within coordinates
Rr478587	regulatory region 478587	2 bp proximal
Rr478588	regulatory region 478588	1110 bp proximal
Tssr119535	transcription start site region 119535	539 bp downstream
Tssr119536	transcription start site region 119536	475 bp downstream
Tssr119537	transcription start site region 119537	392 bp downstream
Tssr119538	transcription start site region 119538	282 bp downstream
Tssr119539	transcription start site region 119539	505 bp upstream
Tssr119540	transcription start site region 119540	637 bp upstream
Tssr119541	transcription start site region 119541	792 bp upstream
Tssr119542	transcription start site region 119542	930 bp upstream
Tssr119543	transcription start site region 119543	1176 bp upstream
Tssr119544	transcription start site region 119544	1192 bp upstream
Tssr119545	transcription start site region 119545	1236 bp upstream
Tssr119546	transcription start site region 119546	1264 bp upstream
Tssr119547	transcription start site region 119547	1479 bp upstream
Tssr119548	transcription start site region 119548	1635 bp upstream
Tssr119549	transcription start site region 119549	1753 bp upstream