rs214328095 SNP Detail

Summary

• ID
  rs214328095
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53872564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCTCAAT CTTCCTTCTG
  AATCCACTTA AAAATTCTTA GATAAAGGAC ACTAAGAACA TATAAGAGAA CCTGGATTTC
  CCCAGTAAGT AATGTTTTAA TGACATTATT GTAGAAACTT GAAGAACAAA CAACCAGAGG
  ACAGTGATGT AAAACCTGAG CTTTTTCGGG AGGCAGAGGC AGGAGGATTT CTGAGTTCGA
  K
  GCCAGCCTGG TCTACAAAGT GAGTTGCAGG ACAGCCAGGG CTACACAGAG AAACCCTGTC
  TTGAGCCCTC CCACCCCCAA CAAAACAAAA CAAAAAACCC CTGAGCTTTT TTTTTTTTTT
  TTTTTTTTTT TTTTCCCCAG ACAGGATTTC TCTGTGTAGC CCTGGCTGTC CTGCAACTCA
  CTTTGTAGAC CAGGCTGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398495023	MGP_WTSI_17_53704861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214328095					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398495023	MGP_WTSI_17_53704861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53872564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	1206 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	1325 bp upstream
Rr339992	regulatory region 339992	436 bp proximal
Tssr5169	transcription start site region 5169	363 bp upstream
Tssr145221	transcription start site region 145221	1200 bp upstream
Tssr145222	transcription start site region 145222	1440 bp upstream
Tssr145223	transcription start site region 145223	1723 bp upstream
Tssr145224	transcription start site region 145224	1752 bp upstream
Tssr145225	transcription start site region 145225	1778 bp upstream