rs214342066 SNP Detail

Summary

• ID
  rs214342066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43086335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTATGGG ACTGGTGTTT
  TGACCCCACT GCCCCTTTAC TGTTGGAAAC TCTAATGCTA GAGTCTCAGA GTGTAAAAAC
  CACAGGAAAG TGTGACACAA CTGTTTCCTC AGCCACATCT CCCCTTTCAG TTAATTCACA
  CCCTAGTATG ATTAGCCCAC CTCCCACCTC TGGGCACCCC CTCAAGTCCC ACCCCACCCC
  Y
  AAGGTCTTCC AGGAAACCAG TTGTCTCCAA CTGTGGAGAA CCTGTGCAGA ACCTGTGACA
  ACAGTCTAAA CCACTACCTA GAACACGAGG GTAGATACCC CCAGAGCTGC AAGCAAGTAA
  AGGCTTCTGC AGGGCCCACC CCTACCACAT AGGAGGAGAG GAGCCAATCG AAGAGGGGAG
  GCCAAACCAC TCAGGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196973	CHEV_7_50692281	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214342066					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43086335 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	920 bp downstream
Lim2	lens intrinsic membrane protein 2	915 bp downstream
Nkg7	natural killer cell group 7 sequence	227 bp upstream
Tssr2210	transcription start site region 2210	97 bp upstream
Tssr65999	transcription start site region 65999	55 bp upstream
Tssr66000	transcription start site region 66000	221 bp upstream
Tssr66001	transcription start site region 66001	675 bp upstream
Tssr66002	transcription start site region 66002	689 bp upstream