rs214343007 SNP Detail

Summary

• ID
  rs214343007
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45434748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCCCC CTCCAAGGGT
  CTGTTGGTCT CTGTCTGTCC CTCCTCCCCC TCCCTATTCT CCCCTCCCGC CTGGCAGCCA
  ATGCAACCGG GAACCAGTTG CCATGACAAC GCTCCCTCCT TCCTCCTCCC ACCCTTCCTC
  TGACAGGCTC TCTGCTCCCC CAATCCCGAT TGTCCTCGGG GGCGGGGCCC TCGTTCTCTC
  C
  CCCCCCCATC TTCCCCTCCC CCCTACCCCA GCAACCCCGG CTCCCCAGCT CCTCTCCTCC
  GTCCGCCTCT CCATCCCTTC ATCCGTCTGT CCTTTCGAGG AGGGGGAGGG GGGTATCAGA
  ACCAGTAAGC AACCCCTCCC TCCCCCTGTC CTGCATCTCC CGCCCCTCTC CTGGGCTGAG
  GGAGGCCAGG GTTGAGCGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss371184864	MGP_WTSI_7_53040694	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs214343007					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371184864	MGP_WTSI_7_53040694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45434748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19088	CpG island 19088			1155 bp distal
Cpgi19089	CpG island 19089			59 bp proximal
Cpgi19090	CpG island 19090			1154 bp proximal
Lmtk3	lemur tyrosine kinase 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646575	regulatory region 646575			1367 bp distal
Rr646576	regulatory region 646576			666 bp distal
Rr646577	regulatory region 646577			within coordinates
Tssr66636	transcription start site region 66636			1592 bp downstream
Tssr66637	transcription start site region 66637			1380 bp downstream
Tssr66638	transcription start site region 66638			7 bp upstream
Tssr66639	transcription start site region 66639			246 bp upstream
Tssr72472	transcription start site region 72472			293 bp upstream