rs214348367 SNP Detail

Summary

• ID
  rs214348367
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTCAA TGAACACAGC
  AGCTATTTTC CCATTATGCT ACCCCAGGTT GTAGGACTTG GCTATGACAG AGACCCAACG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGATAA ACAAATGGTG
  TCCTCCTCCC TCTAGACGCC CATTTGCAAA TTGCTGTCTG CCCATCCCAC GCCCCCAAAT
  M
  CTATCCCCCC GCCCATCACC CACCCCACCA ATTTCTCCAG CTTCCCCACA GTTCCCGATG
  CTCCCACCTG TCTCTGAGGA AATGTTGACC TCTATGCTGA GGTCAGGCAC TGGTGACCCT
  GGGAAGGAAG CCATGCACAG ATAAGTGCCG TAGTCACTGA AGTGCAGGTC AATGAGCTCC
  AGGCTGCTGG TGACAGCGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355128	CHEV_17_29983198	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214348367					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56908	predicted gene, 56908			290 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1			Intron
				Noncoding-Transcript-Variant
Rr392501	regulatory region 392501			555 bp upstream
Rr525087	regulatory region 525087			117 bp proximal
Rr525088	regulatory region 525088			995 bp proximal
Tssr143596	transcription start site region 143596			277 bp upstream
Tssr143597	transcription start site region 143597			294 bp upstream
Tssr143598	transcription start site region 143598			1967 bp upstream