rs214348646 SNP Detail

Summary

• ID
  rs214348646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49428742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAAGAA TCCGGTTACA
  CCGAATCATT TCACGCTAGA CCGACTACGA AAACGTACCG GGCCGTCCAC CTCTGAGGGA
  GCCCCGGGAG CCATTATAAG CGGTGGTGAG AAGGGGGGCT GGGGGATGGG GAGGAGTAGG
  TGGAGGAGTG AAGGGGAGAG GAAAGGAGGG AGGGAGAAGG GGTGGGTTAG TGAAAGGGGA
  W
  GAAGGGAGAG GGGAGGAGGA AGGAAGGCAA GCGCATTGAG GAACCACCAG GGAAAATGGG
  CCTGAGGAGG AGAAAAGAGT GGGAAGGGAA ATGAACAAGA CAACCCAGGC TCACAGATCT
  CTCTAGCTAG GTTGGCAAAG CTCATCACGT CGCCAGGCTC CGTGAGAAAC CCCAAGCCTA
  GAAATCAACC TTTGGCACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385922520	MGP_WTSI_12_50482946	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214348646					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385922520	MGP_WTSI_12_50482946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49428742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	1002 bp proximal
Foxg1	forkhead box G1	924 bp upstream
Gm34304	predicted gene, 34304	131 bp upstream
Gm56518	predicted gene, 56518	620 bp downstream
Rr465759	regulatory region 465759	within coordinates
Rr465760	regulatory region 465760	1059 bp proximal
Rr465761	regulatory region 465761	1795 bp proximal
Tssr113389	transcription start site region 113389	15 bp upstream
Tssr113390	transcription start site region 113390	98 bp upstream
Tssr113391	transcription start site region 113391	693 bp upstream
Tssr113392	transcription start site region 113392	717 bp upstream
Tssr113393	transcription start site region 113393	832 bp upstream
Tssr113394	transcription start site region 113394	1126 bp upstream
Tssr113395	transcription start site region 113395	1958 bp upstream
Tssr116231	transcription start site region 116231	129 bp upstream