rs214352274 SNP Detail

Summary

• ID
  rs214352274
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52116500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAAAGGT GTGCACTATC
  ATGGCATGGC TTATAAATTT TTAAAAAAAA GAAAACTGAG CCGGGCGTGG GAGCGCACGC
  CTTTAATCCC AGCATGCAGG AGGCAGAGGC AGGTGGATTT CTGAGTTCGA GGCCTGGTCT
  ACAAAAAAAA GTGAGTTCCA GGACAGCCAG AGCTACACAG AGAAACCCTG TCTCGAAAAA
  C
  AAAAAAAAAA AAAAAAAAAA AACCAAAAAA GAAAGAAAAC TGTAGAATGC TAACTGAATA
  TAAGTGTGCA TTGTTCTTCT TCACCTCATA ACTGTGGATG CACTGTGGAT TGGACCTACT
  GTGAGTCAAT ATGGCCAGCT GCCTCTCTCT TCTATCACTG GACCTACTGT GAGCCAAGAT
  AAATCTTTTC TCCTTTAAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss383370558	MGP_WTSI_11_52039175	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs214352274					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383370558	MGP_WTSI_11_52039175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52116500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2851	CpG island 2851	1177 bp distal
Gm73588	predicted gene, 73588	180 bp downstream
Rr386070	regulatory region 386070	757 bp downstream
Rr386071	regulatory region 386071	1156 bp upstream
Rr446812	regulatory region 446812	1035 bp distal
Rr446813	regulatory region 446813	611 bp distal
Tssr3490	transcription start site region 3490	1032 bp downstream
Tssr101317	transcription start site region 101317	1317 bp downstream
Tssr101318	transcription start site region 101318	990 bp downstream