rs214360827 SNP Detail

Summary

• ID
  rs214360827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53214320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATTTTT TCAAGACAGG
  GTTTCTCTGT GTCGCCTTGG CTGTCCTGGA ACTCACTCTG GAGACCAGGC TGGCCTCATA
  TTTGCTATAT AGCCCAGGTT GGCCTTAACC TCCTTGTCCT CCTTTCTCTA CATCCTGAAT
  CCTGATTTTA GAAACTTGTG TCATAACTTG GGAATTAGAC TAGCCTGAGC TAAGTTTCTG
  R
  CCAGCCTGAA AAATTAAAGA TGTTATCTTT AACAATTAAA AAAAAAAAAA AAAAAAAAGA
  GGGGCCTGGA GAGATGGCTC AGAGGTTAAG AGCACTGACT ACTCTTCCAG AGGTCCTGAG
  TTCAATCCCA AGCAAACACA TGGTGTTTCT GTCTGGTCCT GTCTCCCTCT CCACTCCCCT
  TACCCCTCCT CCTCTCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672278	CHEV_11_53136995	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214360827					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53214320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	1098 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	872 bp proximal
Rr447002	regulatory region 447002	1142 bp proximal
Rr447003	regulatory region 447003	1197 bp proximal
Tssr101382	transcription start site region 101382	1181 bp upstream
Tssr107917	transcription start site region 107917	1097 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	1196 bp upstream