rs214376393 SNP Detail

Summary

• ID
  rs214376393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17840839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGACTT CCTTCTGCCG
  TGCTCTTTCG CAGCTGTTGA CTTTCTGTCG TGGGACAGGG GACCGGCTGT GGGCATCTGG
  GCTAAGTGAG GTATTGCGGA GACCGAACCA GGCCTGCTGC GGCCACCGCC TCTCCGGACG
  CCTGGTGTCC GCGGCCCCGG CCGGGCCACG GGCAAGCACC TGGGCTCGGA CCCAGGGTCT
  R
  CGAGAACGTG GGCGCCTCCC GCGTGGGGTC TTCGGCTTCT CCCAAACGCT CCCCGCCTCC
  CTGCACGTGC AAACGTGGCG GGACAGCTGG TGAGGCTGGG CGCGGAGGCC TCAGGGGTTT
  GGGCAGTTAG CAGCGGCCGG TGGCCCACAC TGTGGACGGT CGTCTGGGAG CTTTCAGCGC
  CCTGGGTAGG CCTAGCGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118599	MGP_WTSI_3_17686675	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214376393					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118599	MGP_WTSI_3_17686675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17840839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	within coordinates
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	959 bp downstream
Gm66000	predicted gene, 66000	665 bp downstream
Rr573838	regulatory region 573838	1074 bp distal
Rr573839	regulatory region 573839	746 bp distal
Rr573840	regulatory region 573840	627 bp distal
Rr573841	regulatory region 573841	329 bp distal
Rr573842	regulatory region 573842	within coordinates
Rr573843	regulatory region 573843	453 bp proximal
Tssr32672	transcription start site region 32672	1359 bp upstream
Tssr32673	transcription start site region 32673	1118 bp upstream
Tssr32674	transcription start site region 32674	1091 bp upstream
Tssr32675	transcription start site region 32675	1059 bp upstream
Tssr32676	transcription start site region 32676	357 bp upstream
Tssr32677	transcription start site region 32677	159 bp downstream