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rs214376902 SNP Detail
Summary
  • ID
    rs214376902
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:26492964 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATTTTAATT CACAGATCAT
GTTACCATAC ATTAGAGCGA TGCCTCAGAA CACAGTGTAA TTCCACAGAG AGATACATAT
ACATATATCC CTGAGCATTA GACCTCATCT GGACATACTC ACATGAGGCC TGCGTGATGG
TTCTTTGTCT AATAATAGCT TATGAAACAA CATCAATCCA TCAAGAGGGC AGTCCATGAG
Y
TGAGTTACTG CGGTAAGGAG CTAACTGCTG CTGGGTGTGA TTGGTCGCCT GTTTATCTAT
GCAACCATTA GACTCCAAAC TCCAAACAGA TCGAAACCTG GGACCTTTTT TTTTTTTTTC
AAATAACACC ATGAAGCGTC CCTCTTACAA AAACACAGCC CATGATTTTA TCATTGAACA
CATTATAACA GAGACACCAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385360801 MGP_WTSI_12_27127830 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214376902 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385360801 MGP_WTSI_12_27127830 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:26492964 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D12Mit219 DNA segment, Chr 12, Massachusetts Institute of Technology 219 1852 bp distal
Rr464136 regulatory region 464136 1157 bp proximal
Rsad2 radical S-adenosyl methionine domain containing 2 within coordinates
Tssr112998 transcription start site region 112998 776 bp upstream
Tssr112999 transcription start site region 112999 823 bp upstream
Tssr113000 transcription start site region 113000 947 bp upstream
Tssr113001 transcription start site region 113001 1421 bp upstream
Tssr113002 transcription start site region 113002 1445 bp upstream
Tssr113003 transcription start site region 113003 1520 bp upstream
Tssr113004 transcription start site region 113004 1580 bp upstream
Tssr113005 transcription start site region 113005 1606 bp upstream
Tssr113006 transcription start site region 113006 1969 bp upstream
Tssr115902 transcription start site region 115902 95 bp upstream
Tssr115903 transcription start site region 115903 224 bp downstream
Tssr115904 transcription start site region 115904 241 bp downstream
Tssr115905 transcription start site region 115905 546 bp downstream
Tssr115906 transcription start site region 115906 674 bp downstream
Tssr115907 transcription start site region 115907 729 bp downstream
Tssr115908 transcription start site region 115908 769 bp downstream
Tssr115909 transcription start site region 115909 855 bp downstream
Tssr115910 transcription start site region 115910 907 bp downstream
Tssr115911 transcription start site region 115911 957 bp downstream
Tssr115912 transcription start site region 115912 971 bp downstream
Tssr115913 transcription start site region 115913 1006 bp downstream
Tssr115914 transcription start site region 115914 1058 bp downstream
Tssr115915 transcription start site region 115915 1087 bp downstream
Tssr115916 transcription start site region 115916 1144 bp downstream
Tssr115917 transcription start site region 115917 1190 bp downstream
Tssr115918 transcription start site region 115918 1209 bp downstream
Tssr115919 transcription start site region 115919 1236 bp downstream
Tssr115920 transcription start site region 115920 1263 bp downstream
Tssr115921 transcription start site region 115921 1568 bp downstream
Tssr115922 transcription start site region 115922 1664 bp downstream
Tssr115923 transcription start site region 115923 1747 bp downstream
Tssr115924 transcription start site region 115924 1818 bp downstream
Tssr115925 transcription start site region 115925 1833 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory