rs214379462 SNP Detail

Summary

• ID
  rs214379462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29229117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCCCCG CGGGCGGCGC
  AGGCGCAGTG GGGCGTGCCG GCCTCCGCCC CCCCGCCAAC CCCCGCCGGC TTGCCCACGC
  CCCGCTCCGC CGCTCGGGGC CGCTTTCCCG AAGCTGCACC GCGCCGGAGC CCGCCGAGCA
  GGGCAGCTGA GCCGGCGTCG CGGGGCCGAG CGGAGGCGGC GTGCGGCCCC TGGAGGGCGG
  R
  GACGGGCTCG GCGCGCGGTG GGCGTGGCGT GGGCTGCAGG AAGCTGAGGC AGAGCAGAAA
  GGGGGCAGCA GCGGCCACCG CCGGCCTCCC GCCGCGCTGA CAGGCTGGGC GGGCCCCCGC
  TCTGGGCGAG CTCGCGCGGC GTCGGCGCCT CGGCCGCGGC CCCGGCTCCG GAGGCGCCCG
  TCCGTCCCGG CGAGGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss402211700	MGP_WTSI_19_29326207	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214379462					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211700	MGP_WTSI_19_29326207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29229117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	within coordinates
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	216 bp upstream
Jak2	Janus kinase 2	111 bp upstream
Tssr155779	transcription start site region 155779	1079 bp downstream
Tssr155780	transcription start site region 155780	52 bp downstream
Tssr155781	transcription start site region 155781	31 bp upstream
Tssr155782	transcription start site region 155782	143 bp upstream
Tssr155783	transcription start site region 155783	175 bp upstream
Tssr155784	transcription start site region 155784	583 bp upstream
Tssr155785	transcription start site region 155785	712 bp upstream
Tssr155786	transcription start site region 155786	737 bp upstream
Tssr155787	transcription start site region 155787	837 bp upstream
Tssr158749	transcription start site region 158749	377 bp downstream