rs214386406 SNP Detail

Summary

• ID
  rs214386406
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:54982784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGTGTT GCTCCCTCAT
  TGGCCCGGGT GGGTGAGGGA CGTGCAGAAC AGGAAGGAAG GGGAGCGCTG ACCCAGGCCA
  CTCGGGAGAC GACCGCGCAG GGCTGGGGTC TGAGGGCCCC GGGACGCGCG TCCGCGGAGT
  GGACGGCCCG CGGCGAAGCC CTCGGGGACC GCGCACACAG CCCCGGGCGG GGCCGGCCGG
  V
  CGGCCGCACT CACAGCATGA TCCGCGAGAC GTGCAGCCGC ACTGGGACGC TCCTGTCTTT
  GAAGGCGGTG GTGATGAAGC AGCCGAAGGT GAGCGCCGCC ATCACGCTCA GCGAGAAGGC
  GAACAGGGAG TTCGCGCGCG ACAGGACGGT GTTCATCGTG GCGACCTTTC CCTCCCGGGC
  CCCGGCTCCC ACACTCGCAC                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374743851	MGP_WTSI_8_55615102	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214386406					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374743851	MGP_WTSI_8_55615102	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54982784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	within coordinates
Rr400849	regulatory region 400849	210 bp upstream
Rr663552	regulatory region 663552	239 bp proximal
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	Intron
Tssr77367	transcription start site region 77367	1718 bp downstream
Tssr77368	transcription start site region 77368	116 bp downstream
Tssr81305	transcription start site region 81305	386 bp upstream
Tssr81306	transcription start site region 81306	335 bp upstream
Tssr81307	transcription start site region 81307	186 bp downstream
Tssr81308	transcription start site region 81308	202 bp downstream