rs214391693 SNP Detail

Summary

• ID
  rs214391693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9895080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCACAGGG TTAGCTCTAG TTATAGCCAT
  GTTCCAGGGA GACATTTGAT CAGAAAATCC AGAACAGGGA ACAGCTGGAA TCTAGCTACT
  GAGGCAAAGT GTGTATGTAT TGTTTGAAAA GGAAGGATGA AATATCAGTA GAGAGAACTC
  R
  GTTGGTGGCA GGAGTTCTTT TTGGCATACT GCAGTTGTGG CGTTGTGCCT CCAAAGGCTC
  TCAGAAGCTC ACTACTGGAA ACTCACTGTT GAGCAGCTTT GGAGAGACAG ATACATGGca
  cgcacataca tacatacaca cacacacata                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320652039	CHEV_3_9830020	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214391693					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9895080 () rs orientation: forward

Symbol	Name	Function Class
Gm55352	predicted gene, 55352	292 bp upstream
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr78180	regulatory region 78180	520 bp proximal