rs214416980 SNP Detail

Summary

• ID
  rs214416980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110789232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC AGAGGGTGGC ATTGAACTCA
  Y
  GATTCTCAGA GTTCAACCTT CCCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195050	CHEV_9_110862668	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214416980					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110789232 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr198765	regulatory region 198765	232 bp distal
Rr198766	regulatory region 198766	1569 bp proximal
Rr202611	regulatory region 202611	1193 bp proximal
Tssr87447	transcription start site region 87447	288 bp upstream
Tssr87448	transcription start site region 87448	662 bp upstream
Tssr87449	transcription start site region 87449	679 bp upstream
Tssr87450	transcription start site region 87450	725 bp upstream
Tssr87451	transcription start site region 87451	763 bp upstream