rs214418593 SNP Detail

Summary

• ID
  rs214418593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134422418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGCGCCT GCGCAATAGA GTTCAGACGC
  CTGCGCAGAG GTACAGCGAG AGGCACGGGC GGGGCGCCCC CAGGGACCTG CGCCAGCGTA
  GTTCCGGGTG AGCCAGCTCA GATCGCGCGT GCGCCGTTGT GGCTGATGGT GTGGCGGCAC
  R
  GCGATGGAAC CCTGCGAGCT GCAGAACGAG CTCGTGTCAG CCGAGGGCCG GAACCGGAAG
  GCGGTGCTGT GCCAGCGTTG TGGCTCTCGG GTGCTGCAGC CAGGGACTGC TCTTTTCTCT
  CGCCGGCAGG TAGGAAAGTG CTTGATGCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319982686	CHEV_1_136391257	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214418593					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134422418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	within coordinates
Rabif	RAB interacting factor	mRNA-UTR
Rr396314	regulatory region 396314	within coordinates
Rr418927	regulatory region 418927	929 bp distal
Rr418928	regulatory region 418928	22 bp distal
Rr418929	regulatory region 418929	50 bp proximal
Rr418930	regulatory region 418930	491 bp proximal
Tssr8899	transcription start site region 8899	1 bp downstream
Tssr8900	transcription start site region 8900	56 bp upstream
Tssr8901	transcription start site region 8901	306 bp upstream