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rs214418815 SNP Detail
Summary
  • ID
    rs214418815
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:69556917 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGTAACGG CCTTTTTGTG
AGGACAGTCT TCCTCTGTTC CTTGGGCTTT CAGTAAGAGA TTGGTTGGCC ACCCAGGTGC
AGGCTCCTGC CCATGAGCCC TCCCTCCCCC ACCTCCCATT TCTCCTTACC TATAAGCGGT
CCTAGCAAGA TCAGACACAC AGGGAGCCGC ATGGCAGAGA TGCTCAGACC AGCTAGGCTA
Y
ACCAGTTCCT TCCTCAATCC AATCCCCTTT GCCTTCTCTT GGAAGAGGAA ATGAAAAGCC
TCACTTCCCT TAACTAAAAT AATCCCACCC CAAACCTGAC TCAGACACCT CAGCTTTAGC
AACCCACTCA AGCCATTGGT TTTCACAATT AGGCTGTGAT TGGCAGTGAC GTTCTCAGTG
GGCGGTACAA AGCCTTGGTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383788476 MGP_WTSI_11_69479593 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214418815 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383788476 MGP_WTSI_11_69479593 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:69556917 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cd68 CD68 antigen within coordinates
Eif4a1 eukaryotic translation initiation factor 4A1 845 bp downstream
Gm24029 predicted gene, 24029 1743 bp downstream
Gm73992 predicted gene, 73992 within coordinates
Rr450060 regulatory region 450060 1912 bp distal
Rr450061 regulatory region 450061 within coordinates
Tssr102508 transcription start site region 102508 1907 bp downstream
Tssr102509 transcription start site region 102509 1872 bp downstream
Tssr102510 transcription start site region 102510 1738 bp downstream
Tssr102511 transcription start site region 102511 1703 bp downstream
Tssr102512 transcription start site region 102512 455 bp downstream
Tssr102513 transcription start site region 102513 417 bp downstream
Tssr102514 transcription start site region 102514 387 bp downstream
Tssr102515 transcription start site region 102515 249 bp downstream
Tssr102516 transcription start site region 102516 381 bp upstream
Tssr102517 transcription start site region 102517 411 bp upstream
Tssr108748 transcription start site region 108748 1709 bp upstream
Tssr108749 transcription start site region 108749 1632 bp upstream
Tssr108750 transcription start site region 108750 1603 bp upstream
Tssr108751 transcription start site region 108751 1574 bp upstream
Tssr108752 transcription start site region 108752 1161 bp upstream
Tssr108753 transcription start site region 108753 971 bp upstream
Tssr108754 transcription start site region 108754 771 bp upstream
Tssr108755 transcription start site region 108755 726 bp upstream
Tssr108756 transcription start site region 108756 696 bp upstream
Tssr108757 transcription start site region 108757 505 bp upstream
Tssr108758 transcription start site region 108758 266 bp upstream
Tssr108759 transcription start site region 108759 248 bp upstream
Tssr108760 transcription start site region 108760 186 bp upstream
Tssr108761 transcription start site region 108761 15 bp upstream
Tssr108762 transcription start site region 108762 within coordinates
Tssr108763 transcription start site region 108763 71 bp downstream
Tssr108764 transcription start site region 108764 1134 bp downstream
Tssr108765 transcription start site region 108765 1279 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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