rs214430405 SNP Detail

Summary

• ID
  rs214430405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121280346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCCGG GTTCCCTGAG
  TGGTGGGCCC CGGCGCGTGC CCGTGAGGCC CCGGCGCGTC CCACACACCG CAGCAGCTGT
  CTGGGCCCCC GCGCCGCCTC AAACTTGACG CGCGCCGCCA GCAGTCTCGA CCGCACCGTC
  CTCCCGCACC CCCAAGTTAA CCTACCCCGG GCAGCCGAAG CCCCGCGATG GGGTCGGCGC
  Y
  GCGGCGGGGG TTGGGGGGAC GGTCGGGGTC CCAGTTGCGG GGAGGAGGGG CGCTGGTGTG
  TACGTGGAGC GGCTCCGGCG TCTCACTTTG TACCTTCTCT TCTTCTTAGG CGGTAACCAG
  CGAGAGCTCG CCCGCCAGAA GAACATGAAG AAGCAGAGCG ACTCGGTTAA GGGAAAGCGC
  CGAGATGATG GGCTTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355466735	MGP_WTSI_2_121275601	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214430405					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355466735	MGP_WTSI_2_121275601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121280346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12159	CpG island 12159	within coordinates
Gm22953	predicted gene, 22953	805 bp downstream
Gm75262	predicted gene, 75262	within coordinates
Rr55495	regulatory region 55495	within coordinates
Rr55496	regulatory region 55496	1654 bp proximal
Rr397250	regulatory region 397250	449 bp downstream
Serf2	small EDRK-rich factor 2	within coordinates
Serinc4	serine incorporator 4	1312 bp downstream
Tssr19771	transcription start site region 19771	472 bp downstream
Tssr19772	transcription start site region 19772	441 bp upstream
Tssr25936	transcription start site region 25936	330 bp downstream