rs214432543 SNP Detail

Summary

• ID
  rs214432543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:58970777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT GCTGAGGACG AGGAGGAACT
  M
  GAATCTCAGG AGCTGCCTCG GGGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325637466	CHEV_18_58997359	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214432543					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58970777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adamts19	ADAM metallopeptidase with thrombospondin type 1 motif 19			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi10085	CpG island 10085			within coordinates
Rr538499	regulatory region 538499			1028 bp distal
Tssr151225	transcription start site region 151225			1523 bp downstream
Tssr151226	transcription start site region 151226			1496 bp downstream
Tssr151227	transcription start site region 151227			1366 bp downstream
Tssr151228	transcription start site region 151228			1331 bp downstream
Tssr151229	transcription start site region 151229			1309 bp downstream
Tssr151230	transcription start site region 151230			954 bp downstream