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rs214442918 SNP Detail
Summary
  • ID
    rs214442918
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr13:41757223 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCAGTGATA GTATCGGAAA
    CAATCATAGA GCCAACCTCA AACGTCGTCG TATAGGATTT TCCTTTAGAC GGGAACGCTT
    CTCCTTGGAC GGATGTAGAG GGACTCACAA GAAAGTTACA AAAACTCACA ACAACAGAGT
    TAGAAGCCTT ACATAATCTT CCTGAGGTTA CATAAGCAGT AAACATTTGC TGGGGTAAAG
    R
    CTCTTGTGTG GGCAGGCTCA TGTGTGTGAG GCAGATGAGG AGGGCCTATC TGTCCATCAG
    GCGATAGGCA GCTGTTAACT ACTATCAACA TACTGCTAAA ACACATTATG AACACCATTA
    CTGTTAATGG TAATTTCTTA AATTATGGGC TCTCTTTCCA ATATTCATCT ACTAATAAAG
    ATGTTGGGGA TGGGTTAGTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss388394202 MGP_WTSI_13_41699116 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214442918 SNP A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss388394202 MGP_WTSI_13_41699116 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:41757223 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5501 CpG island 5501 1417 bp proximal
Gm32184 predicted gene, 32184 within coordinates
Rr281294 regulatory region 281294 1177 bp proximal
Tssr122210 transcription start site region 122210 1750 bp downstream
Tssr122211 transcription start site region 122211 1783 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory