rs214457588 SNP Detail

Summary

• ID
  rs214457588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80071386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCCTC CCGAGTGCTG
  GGATTAAAGG CGTGCGCCAC CACGCCCGGC TTATGGCCAA TTTTTAAATG GTTCAATTGA
  AAAAAAATCA GATATACATA TGTATATATG TACATGAATG GAATGTATGT GTGTGTATTT
  CTGTATCTAT ATACAGAGAG CATACCACTG ATGAGTCTAG ATGAAATGTA AATGGACATT
  W
  ATTTTCCTAT TTGTGAACAT TTTATATAGA TTTGAGTTTT CATATTAAAA CATTGATAAA
  ACATCCAGGC TTCACTCTTC AAAGTCAATG GTTTTCCTTT GAGAATCCAA TATCAGCAGA
  GCCAGGCACA GAGGGTACAT CTGTAGACCC AAGCACTCAG GGGGTTCAGG CAGAACCATT
  TGAGCCAAAG AGTCTGAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383995251	MGP_WTSI_11_79994062	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214457588					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383995251	MGP_WTSI_11_79994062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80071386 () rs orientation: forward

Symbol	Name	Function Class
Adap2	ArfGAP with dual PH domains 2	1602 bp downstream
D11Bhm113	DNA segment, Chr 11, Boehm 113	427 bp proximal
Rr386348	regulatory region 386348	205 bp upstream
Rr452448	regulatory region 452448	709 bp distal
Rr452449	regulatory region 452449	1003 bp proximal
Tssr103501	transcription start site region 103501	1993 bp downstream
Tssr103502	transcription start site region 103502	1895 bp downstream
Tssr103503	transcription start site region 103503	1836 bp downstream
Tssr103504	transcription start site region 103504	1799 bp downstream
Tssr103505	transcription start site region 103505	1702 bp downstream
Tssr103506	transcription start site region 103506	1386 bp downstream
Tssr103507	transcription start site region 103507	1225 bp downstream
Tssr103508	transcription start site region 103508	1192 bp downstream