rs214472901 SNP Detail

Summary

• ID
  rs214472901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57527833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCTC ACTCTTTCCT
  CACACACTGC CCAGCTGGCC TCCATCCTCC TCCTTCTAGC CTCCCAGGGG ACAAGGTTGG
  GGGCACAGTC TTTGGGCCAC TCTTCTAGCA AACAGGTGCA GCCACCCATC ACTGGGCAGT
  TGTGCTCCCC CACCCCCACC CGAGTGTCAC CCTACAAGCC ACCACTCATT CCTGGCCAGG
  Y
  CCAGCACTGG GCAGTTGTGT CCCCCCACCC CACCCGAGTG TCACCCTACA AGCCACCATT
  CACTCCTGGC CAGGCCCAGC ACTGGGCAGT TGTGTTCCCC CATCCCCACC TGAGTGTCAC
  CCTACAAGCC ACCACTCACT CCTGGCCAGG CCCAGCACGT GGTCTCTTCT GTGTTGTTCA
  CGCAGCTTGG TGATGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398573128	MGP_WTSI_17_57360256	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214472901					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573128	MGP_WTSI_17_57360256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57527833 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	within coordinates
Rr405394	regulatory region 405394	1348 bp downstream
Tssr145377	transcription start site region 145377	1357 bp upstream
Tssr148933	transcription start site region 148933	1941 bp upstream
Tssr148934	transcription start site region 148934	637 bp upstream
Tssr148935	transcription start site region 148935	208 bp downstream
Tssr148936	transcription start site region 148936	225 bp downstream
Tssr148937	transcription start site region 148937	248 bp downstream
Tssr148938	transcription start site region 148938	519 bp downstream
Tssr148939	transcription start site region 148939	1082 bp downstream
Tssr148940	transcription start site region 148940	1417 bp downstream
Tssr148941	transcription start site region 148941	1497 bp downstream
Tssr148942	transcription start site region 148942	1998 bp downstream