rs214477629 SNP Detail

Summary

• ID
  rs214477629
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54492486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTCCTG GCCTTAGTTA
  CTTATATTTG GTCAGACTAA ACCCCCTCTT ACTCTTTTTG AAGTAAGAGT TATAGTGTGT
  AAATGGAGAA TGTGAGTGTG GTGTGTGTGT GTGGGGGGGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGGGA GGGAGAGAGA GAGAGAGCGC TTGAGTGCTT
  S
  AGTGCTTCAT GGCTTCATGG TAGGTATCCT TACCTTAGCT TTTGAGACAG GTCTCCCACT
  CACTAAACAA CCTGGGGCTC ATCATATCAG CTAGGCTGTC TGGCAATGGC AGCAGGATTC
  ACCTAGCTCT GGATTTTCAT TGCTGGGGTT ATAGATGCTC ACTCTTTCCT GACTCTTTAC
  ATGGGTACTG GGTATTGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss377631845	MGP_WTSI_9_54433009	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs214477629					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377631845	MGP_WTSI_9_54433009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54492486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	1029 bp proximal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	1309 bp upstream
Rr401372	regulatory region 401372	945 bp upstream
Rr679158	regulatory region 679158	1085 bp distal
Rr679159	regulatory region 679159	642 bp proximal
Rr679160	regulatory region 679160	1320 bp proximal
Tssr85161	transcription start site region 85161	1248 bp upstream
Tssr85162	transcription start site region 85162	1826 bp upstream