rs214484556 SNP Detail

Summary

• ID
  rs214484556
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116901123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcttcctgg ggtgcagagt tcaattccca
  gaaactccat ggagactcac aaccatctaa tgccctcttc tggcatgcag gtatacatgc
  agatagagca ctcattcata tatatatata tatatatata tatatatata tatatatata
  W
  TACATAAATC ATTTTTTAAA AGATTTCTCT Tggaattgga gagatggccg agggttaaga
  gaactgactg ctcttccaga ggtcgagttc aattcccagc aaccacgtgg tgactcacaa
  acatctgtaa tgggatccca tgcccttttc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494036	CHEV_10_116502274	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214484556					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116901123 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1404 bp upstream
Cpgi2223	CpG island 2223	1180 bp distal
Rr402250	regulatory region 402250	1185 bp downstream
Rr439433	regulatory region 439433	914 bp distal
Rr439434	regulatory region 439434	644 bp distal
Rr439435	regulatory region 439435	446 bp distal
Rr439436	regulatory region 439436	73 bp distal
Rr439437	regulatory region 439437	1651 bp proximal
Tssr99382	transcription start site region 99382	1852 bp upstream
Tssr99383	transcription start site region 99383	1466 bp upstream
Tssr99384	transcription start site region 99384	1416 bp upstream