rs214499821 SNP Detail

Summary

• ID
  rs214499821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGTGTG CAGTTTCATG
  GGATTGGGGC ATGAGCAGGA TGGGGGGATG GGAGGACAGG GCAAAAGGCA AGCAGGCATG
  CACTCTTAGC TTAAAGCCCT GGGTTCCCTC CCCAGCACCT GTGGGAATGA TGCTGCACTT
  GTGTAATCCC AGCACTTTGG AGGTGAAGAC AGGAGGGTCA GAAGTTCAAA ACCGGGCGTG
  R
  TGCCGCACGC CTTTAATCCC AGCACTCGGG AGGCAGAGGC AGGTGGATTT CTGAGTTCGA
  GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTATACAGA GAAACCCTGT
  CTCGAAAAAA CCAAAAAAAA AAAAAAAAAA AAAAAAAACA AGTTCAAAGT CATCCTTAGC
  TACAGTGAGA TTGAGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498908	CHEV_10_117149761	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214499821					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1597 bp distal
Gm56970	predicted gene, 56970	1172 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1947 bp upstream
Rr212986	regulatory region 212986	1191 bp proximal
Rr224309	regulatory region 224309	1009 bp distal
Rr385357	regulatory region 385357	154 bp downstream
Tssr95923	transcription start site region 95923	1758 bp downstream
Tssr95924	transcription start site region 95924	949 bp downstream
Tssr99468	transcription start site region 99468	1969 bp upstream
Tssr99469	transcription start site region 99469	1932 bp upstream