rs214504148 SNP Detail

Summary

• ID
  rs214504148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGACCAT AAACTCTGGC
  AGGTGGTCTT CACAACACTG ACAGCTCCAC GTACTTATAT ATTTCCCTTT TAAAGTTTAT
  GTTTTCCTCT CAGATATGGT AGCTATCAAG ATACAGAGTT AATTTCACAT AGAAATTCTT
  TGTGGGCCTC AGTAATGTCT TTGAATGATG AGAGGAGTGA GTCCTGAGAA CACATGTTGG
  R
  GAAGTATTTC TTTCATTCCT CTTGCCTGAC ACAGCAGGGA TTCAGCCGAG GTACCAGAGA
  CACAGCAAGA CAGAGTGCTA ATTACTATGG TGCCAGAAAC CATCTAAGCT ACTCCTTTGT
  GAGGTCTGGT ATTTAAAGGT AAAACCAAGA GAGCACACAC AGGAACCATA ACTCTAGAAA
  CATATCAAAA GACACTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396132292	MGP_WTSI_16_45381952	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214504148					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396132292	MGP_WTSI_16_45381952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202202 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	296 bp downstream
Tssr4884	transcription start site region 4884	851 bp downstream
Tssr4885	transcription start site region 4885	888 bp downstream
Tssr4886	transcription start site region 4886	1220 bp downstream
Tssr141220	transcription start site region 141220	760 bp downstream
Tssr141221	transcription start site region 141221	783 bp downstream
Tssr141222	transcription start site region 141222	904 bp downstream
Tssr141223	transcription start site region 141223	917 bp downstream
Tssr141224	transcription start site region 141224	936 bp downstream
Tssr141225	transcription start site region 141225	960 bp downstream
Tssr141226	transcription start site region 141226	1012 bp downstream
Tssr141227	transcription start site region 141227	1066 bp downstream
Tssr141228	transcription start site region 141228	1108 bp downstream
Tssr141229	transcription start site region 141229	1124 bp downstream
Tssr141230	transcription start site region 141230	1277 bp downstream
Tssr141231	transcription start site region 141231	1371 bp downstream
Tssr141232	transcription start site region 141232	1423 bp downstream