rs214508021 SNP Detail

Summary

• ID
  rs214508021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191709977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACTTAGA GGAAGCCACA TCTGTTGTCT ACTTTGGGCA
  GAGCAAGCTT CTGAGAGAAA CCAGCCTTAA CGTTCCCCCT TGTGCTGTGC AGGGGACACA
  R
  GCAGGGGGAG AAAGCAGATC TAGAATCAGA GGGGGCTACC TACCTGAGAA ATGCAACTTT
  AGCACCTCTA AGGTGCAGAG TCAAGGCTAG ATGTACAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320196683	CHEV_1_193801897	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214508021					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191709977 () rs orientation: forward

Symbol	Name	Function Class
Gm70525	predicted gene, 70525	1675 bp downstream
Gm70534	predicted gene, 70534	within coordinates
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	633 bp distal
Rr426277	regulatory region 426277	451 bp distal
Rr426278	regulatory region 426278	1271 bp proximal
Tssr10797	transcription start site region 10797	627 bp downstream
Tssr10798	transcription start site region 10798	616 bp downstream
Tssr10799	transcription start site region 10799	571 bp downstream
Tssr10800	transcription start site region 10800	231 bp upstream
Tssr10801	transcription start site region 10801	268 bp upstream