rs214514246 SNP Detail

Summary

• ID
  rs214514246
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180029844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGCCCA TCTTTCTGTT
  TTTCACATTC CTTTCTTCCT CACTCTGGGT GTAGAAGTTG GTAGGGCAGA AGGGAGCCTC
  CACTTCACTT GCGGCGAGAT CTCAAAAATC AAGAGGAGAG ACAAAATATA ACTAAGTTTC
  CCAAGCATTT CCCTTGAACT TTTTTTTTTT CAAATTAGCC TATAGTTTTT TTTTTTTGTT
  G
  TTTTTTTTTT TTCAGAAGTT GGTACAGCAA ACAGGCGGAC AGCCCCTTTG TGTAGCTACA
  AACTACTATT GATCAGGGAC TGATGGATCA GGAACTAGGT GAGGGACAGG GCCCTTCAGA
  AATAGCCTCC AGATTTCCAT GGGAGCGGTT CCTTACGACC ATCTTACATG GTTATGCTGC
  ATAGCAGGGG ATGGCGTTGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	LG/J	PL/J
ss356759424	MGP_WTSI_2_180122756	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	LG/J	PL/J
rs214514246					SNP	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356759424	MGP_WTSI_2_180122756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180029844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12894	CpG island 12894	1505 bp distal
Mir1a-1	microRNA 1a-1	997 bp upstream
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	within coordinates
Rr572733	regulatory region 572733	1585 bp distal
Rr572734	regulatory region 572734	1634 bp distal
Rr572735	regulatory region 572735	850 bp distal
Rr572736	regulatory region 572736	172 bp distal
Rr572737	regulatory region 572737	126 bp proximal
Rr572738	regulatory region 572738	247 bp proximal
Tssr22222	transcription start site region 22222	11 bp upstream
Tssr22223	transcription start site region 22223	1068 bp upstream
Tssr28102	transcription start site region 28102	1288 bp upstream
Tssr28103	transcription start site region 28103	1254 bp upstream