rs214519694 SNP Detail

Summary

• ID
  rs214519694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34923121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATTATGTT CTTTTTCTAT
  CCCAAAAACC TGATTGTGAC ATGTCATTGT GAAATAAACG TTTTGTTCTT TAAAAATAAG
  GAAACATTGT TAATTTTATT ATATATATAT AATATATGCT TATGAAAAAC CTAGTTAAAT
  AGTTACCACC ATTGTTCTCA AATCTTAGTC TACTGGTATA TTCTTTCATT CTTGATTTGT
  R
  TGTGTGTGTA GAAGACTGTA TATTTATTCA ATATCTACAC GTGAATATAT ATGTATGTAT
  AAAGCAACTC ATATATTTGT GCGTTTGAAA AGGTTTATTT ATTGATGTGT TCTATGTATG
  AGTATTTGCC TCCATGTATG TGTCTGCACC ATGTGTATAC AATGGTCACA AAGGACAGAA
  GAGGGAGTAA GACCCTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss374229314	MGP_WTSI_8_35519021	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs214519694					SNP	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374229314	MGP_WTSI_8_35519021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34923121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	265 bp distal
Gm39159	predicted gene, 39159	131 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	951 bp upstream
Rr400818	regulatory region 400818	338 bp downstream