rs214522286 SNP Detail

Summary

• ID
  rs214522286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4539064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGCTTT TTAATTACTT
  GGGCTTTAAC CCTTTACCCT CATGAGCTTA TTAAAAGAAA CTACTCTTTT CACAAATTCC
  AATTCTATCC TAGATCACAT ATTAAAAGAT TGGACTCAGC CACCTAATTC AACACTATTA
  TTCAAATTTG ACTTATGGGT CATCATTGGA GACATAGCTA ATGCGATTTC ATGTAAAGGT
  R
  CACCGGCCGG CCCAGAGCCC CCCAGCTATG CATATGTATT TCAGAATGCG AGCAGCTTTT
  CTGAATTTTT AATCAAACCT TCCCACTGAT GCTACCAAAT GACACTAGAA TCCAGTACAC
  TACAGAGAAG AGAATGAGGT CTGACTCCAT CTCACAGTTT CAGATTCTAA TGAGGGAAAC
  ATTTGCAGTG ATGCATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230137	MGP_WTSI_6_4489064	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214522286					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230137	MGP_WTSI_6_4489064	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4539064 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	1084 bp downstream
Tssr1770	transcription start site region 1770	396 bp downstream
Tssr54726	transcription start site region 54726	1266 bp downstream
Tssr54727	transcription start site region 54727	1185 bp downstream
Tssr54728	transcription start site region 54728	1108 bp downstream
Tssr54729	transcription start site region 54729	1054 bp downstream
Tssr54730	transcription start site region 54730	419 bp downstream
Tssr54731	transcription start site region 54731	374 bp downstream
Tssr54732	transcription start site region 54732	287 bp downstream
Tssr54733	transcription start site region 54733	403 bp upstream
Tssr54734	transcription start site region 54734	414 bp upstream
Tssr54735	transcription start site region 54735	428 bp upstream
Tssr54736	transcription start site region 54736	452 bp upstream
Tssr54737	transcription start site region 54737	474 bp upstream
Tssr54738	transcription start site region 54738	512 bp upstream
Tssr54739	transcription start site region 54739	527 bp upstream
Tssr54740	transcription start site region 54740	591 bp upstream
Tssr54741	transcription start site region 54741	942 bp upstream
Tssr54742	transcription start site region 54742	1464 bp upstream
Tssr54743	transcription start site region 54743	1479 bp upstream
Tssr54744	transcription start site region 54744	1510 bp upstream
Tssr54745	transcription start site region 54745	1522 bp upstream
Tssr54746	transcription start site region 54746	1535 bp upstream
Tssr54747	transcription start site region 54747	1566 bp upstream
Tssr54748	transcription start site region 54748	1610 bp upstream
Tssr54749	transcription start site region 54749	1779 bp upstream
Tssr54750	transcription start site region 54750	1792 bp upstream
Tssr54751	transcription start site region 54751	1800 bp upstream
Tssr54752	transcription start site region 54752	1843 bp upstream
Tssr54753	transcription start site region 54753	1865 bp upstream
Tssr54754	transcription start site region 54754	1974 bp upstream
Tssr59718	transcription start site region 59718	1657 bp downstream
Tssr59719	transcription start site region 59719	1725 bp downstream