rs214524299 SNP Detail

Summary

• ID
  rs214524299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77041442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGTGAAG CAGCCAGAGC
  AAGAGCAGCT TCTGAAGGAG GAAGGCCAGA TCTGGCTGGG AGTCATGAAA GTGCAGAGAT
  GGAGTTGTAG ACCTGCAGGC TGGGGACAGT GTCTAGCCCA GGCAGGGCCA GGGTACAAAG
  CACGGGGGGC GGGGGGGGGG GGGGGGACCA GCTTGTCCTA GCAGAGATGA TTCTGTCCTT
  R
  ACTTGTTGGA TGCAGGCTCA GTGGCGAATG TGGCTGGGAG CACAGAGAAT CCTTCTATGG
  GCTGTGGCTC CGTAGGGGGA GGGCCTTCTT CATGGCTCCC CATGGTAGAT CCTGGGGAGA
  AGAGCCATTC CATGGTTCTA AATAAGTTCT TTTGTCAGGG CAGAATGTGG ATGCATAAAA
  TCATACCCCA CTTCTCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350178615	MGP_WTSI_1_77061380	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs214524299					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350178615	MGP_WTSI_1_77061380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77041442 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1065 bp upstream
Tssr7562	transcription start site region 7562	1061 bp upstream