rs214535441 SNP Detail

Summary

• ID
  rs214535441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151823825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGATCC CCTACTAATA
  CCAAACAAGT ACACTTGTGC ACCAATCCCC AGCTGTGGGT TTCGCGAGAA AACTCATCTG
  TCTTAGTTTT GTCTGGGTGG ACTTTGTTTG CATCCCAGGA TCCAAAGGCC TAAGGTTGTT
  CTCAGTGATC ATGGTCCCAC CCTGTCTAGT CATTGTGTCC ACTTTCAAGC CAAGCCAGAG
  Y
  GAAGAAAGTC TCTTGGAAAA CCACCACTCG CTCTCACAGT TCTGACACCT GTTATCATCT
  GGTCAGGAGG CCCAGTACTT TTCTCTGGTC CTTAACCTTG ACACAAGCCA GGCATAGCCA
  TCTGTCTCAT GGCATCCTCT TGGGAAAGTT TCCACCCAGC CTTCCCACTT ACTCCCACGC
  AATCACACAA TCACATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028122	CHEV_3_151781152	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214535441					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151823825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587459	regulatory region 587459			1445 bp distal
Rr587460	regulatory region 587460			1918 bp proximal
Tssr1098	transcription start site region 1098			1908 bp downstream