rs214535783 SNP Detail

Summary

• ID
  rs214535783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48043622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGACGAGT GAGTCTGGTC
  GGGCCTCAGA CATTCTAAGC CATCCACCCA CCCATCCCGG CACTGCTGGT AGAGGGTGGG
  TGGGAGACCC TCCTCCAAAG TCATAGGTCA CCTATGCAGC AGTCTGGCAG CCCAGCCAAC
  TCCGAAGAAG AGAGGGTATG GCCACACAGG GACAGTCAGC ACATATGATC TCAGACACCA
  R
  GGAGGGCCCC GGTAATCCAA CGCTACAGGT TAGAAGCTGT TTCACCATCC TTGCGACAGC
  CAGTGAGTGG CTCTCTGACT TTCAGTGTGT CTAGAGCCTT CCTTGAGGAT TTGAGATGGC
  CTTGAATAGA CTCTAGGGTC CCCTTACTTC CCTTAAGAAC AACGTGGCCT CTGTATGCAG
  CCACCCGTGC CTCTGTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353031	MGP_WTSI_17_47869646	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214535783					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353031	MGP_WTSI_17_47869646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48043622 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1967 bp distal
Tssr5149	transcription start site region 5149	1209 bp downstream
Tssr145021	transcription start site region 145021	1996 bp downstream
Tssr145022	transcription start site region 145022	1969 bp downstream
Tssr145023	transcription start site region 145023	1931 bp downstream
Tssr145024	transcription start site region 145024	1829 bp downstream
Tssr145025	transcription start site region 145025	1466 bp downstream
Tssr145026	transcription start site region 145026	1226 bp downstream
Tssr145027	transcription start site region 145027	285 bp downstream
Tssr145028	transcription start site region 145028	244 bp downstream
Tssr145029	transcription start site region 145029	227 bp downstream
Tssr145030	transcription start site region 145030	257 bp upstream
Tssr145031	transcription start site region 145031	273 bp upstream
Tssr145032	transcription start site region 145032	281 bp upstream
Tssr145033	transcription start site region 145033	362 bp upstream
Tssr145034	transcription start site region 145034	364 bp upstream
Tssr145035	transcription start site region 145035	1054 bp upstream
Tssr145036	transcription start site region 145036	1062 bp upstream
Tssr145037	transcription start site region 145037	1106 bp upstream
Tssr145038	transcription start site region 145038	1116 bp upstream
Tssr145039	transcription start site region 145039	1481 bp upstream
Tssr145040	transcription start site region 145040	1505 bp upstream
Tssr145041	transcription start site region 145041	1542 bp upstream
Tssr145042	transcription start site region 145042	1560 bp upstream
Tssr145043	transcription start site region 145043	1615 bp upstream
Tssr145044	transcription start site region 145044	1632 bp upstream
Tssr145045	transcription start site region 145045	1642 bp upstream
Tssr145046	transcription start site region 145046	1661 bp upstream
Tssr145047	transcription start site region 145047	1709 bp upstream
Tssr145048	transcription start site region 145048	1741 bp upstream
Tssr148469	transcription start site region 148469	1934 bp upstream
Tssr148470	transcription start site region 148470	259 bp upstream
Tssr148471	transcription start site region 148471	237 bp upstream
Tssr148472	transcription start site region 148472	223 bp upstream
Tssr148473	transcription start site region 148473	209 bp upstream
Tssr148474	transcription start site region 148474	191 bp upstream
Tssr148475	transcription start site region 148475	330 bp downstream
Tssr148476	transcription start site region 148476	358 bp downstream
Tssr148477	transcription start site region 148477	389 bp downstream
Tssr148478	transcription start site region 148478	1101 bp downstream
Tssr148479	transcription start site region 148479	1139 bp downstream
Tssr148480	transcription start site region 148480	1617 bp downstream
Tssr148481	transcription start site region 148481	1647 bp downstream
Tssr148482	transcription start site region 148482	1778 bp downstream