rs214539455 SNP Detail

Summary

• ID
  rs214539455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83533442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCCCCGC GCATCCGACG
  CCCCAGGGTG GTCGGCTCAG AAGGTGAGCG CGGCGTCGCG GAGGCCGACC CGGGCCCGGA
  CTCCTGCCAT GTTTGTCAAC CAGCAACTTC CGAGCGACCT CCGAGCAACT GAAAGGAAGG
  GAGGAGACCG CAGGCCAGGG GACACCCGCC TGCCCGCGCA CGGTTGCAGT TTTCGCCTCC
  Y
  GGCGTCCGCC TCGCCCCCGG CTCGCCGCCG CCACCTCGGC CGTAACCTCC CCGGAGCCTA
  TAGGAATCTT TTGTGTGGCG TCACCGCCTT TCGTTTAAAT CCCGCTTCCT CCTCTCGCCC
  TTCCTCCCGC CCCCTCCGCC GATCCCGGAT GCTTGCGCGA TGCGCTGCTC CTCCCCCGGG
  AAGCTGGGGG CCGTGGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322294677	CHEV_7_91032744	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214539455					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83533442 () rs orientation: forward

Symbol	Name	Function Class
2310034P14Rik	RIKEN cDNA 2310034P14 gene	677 bp upstream
Cpgi19376	CpG island 19376	within coordinates
Mesd	mesoderm development LRP chaperone	within coordinates
Rr168144	regulatory region 168144	within coordinates
Rr400419	regulatory region 400419	42 bp upstream
Tlnrd1	talin rod domain containing 1	within coordinates
Tssr67581	transcription start site region 67581	589 bp downstream
Tssr67582	transcription start site region 67582	566 bp downstream
Tssr67583	transcription start site region 67583	494 bp downstream
Tssr67584	transcription start site region 67584	353 bp downstream
Tssr73402	transcription start site region 73402	764 bp upstream
Tssr73403	transcription start site region 73403	664 bp upstream
Tssr73404	transcription start site region 73404	404 bp upstream
Tssr73405	transcription start site region 73405	64 bp upstream
Tssr73406	transcription start site region 73406	within coordinates
Tssr73407	transcription start site region 73407	28 bp downstream
Tssr73408	transcription start site region 73408	55 bp downstream
Tssr73409	transcription start site region 73409	90 bp downstream