rs214540625 SNP Detail

Summary

• ID
  rs214540625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7680180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGATTAG GCTCCAGCGT
  TGCAGTATGA CAGGATGGAA GAGAGCTACT GTGGTGAGAA AGCATTTCAA CGATGGAACA
  TGGAAAAATG TCCACCAAAA AAAAAAAAAA AAAAAAAAAA AAAAGGAAAG AGAGGAAAGA
  GAAAGAAAAC AGGGAATTGC TGGCAAATGA AATCAGGAAA CTGAGCCTCT CAGGCACACA
  Y
  TTCCAAAAAT GTCATTGGAA CTCAGATGTG GAGAAAAGCA GTAGACAGAG ATGAGGCTGC
  AGGGGTGGTT AAAGACTAAC TCTATAAACA TGTCTAGGTT TGTGGCGGCT GTATTAAACT
  CCCTGACCAT AGGGTACACG TAGGTGTACA ACTGCTCACA TTCTATGCTT TTTTCCCCCC
  ACCTGTTGTT GGGCTTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356879338	MGP_WTSI_3_7615120	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214540625					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356879338	MGP_WTSI_3_7615120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7680180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	1678 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	1360 bp upstream
Rr77757	regulatory region 77757	1179 bp distal
Tssr28304	transcription start site region 28304	1231 bp downstream
Tssr28305	transcription start site region 28305	873 bp upstream
Tssr32541	transcription start site region 32541	1528 bp upstream
Tssr32542	transcription start site region 32542	1464 bp upstream
Tssr32543	transcription start site region 32543	1416 bp upstream
Tssr32544	transcription start site region 32544	1388 bp upstream
Tssr32545	transcription start site region 32545	1355 bp upstream
Tssr32546	transcription start site region 32546	1335 bp upstream