rs214542945 SNP Detail

Summary

• ID
  rs214542945
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACAGCT AGCGCCCCAC
  AGCGAACAGA TGCGCGAGAG CCTGGCCCAG CGCCTGGCTG AGCTCAAGAG CAACCCTACC
  TTGAACGAGT ACCACACCAG GGCCAAAACC CACCTGAAGA CACTTGGCGA GAAAGCCAGA
  CCTGCGCTGG AGGACCTGCG CCATAGTCTG ATGCCCATGC TGGAGACGCT TAAGACCCAA
  K
  TCCAGAGTGT GATCGACAAG GCCAGCGAGA CTCTGACTGC CCAGTGAGGT GCCCGCTTCC
  ACTCCCCACC CCCGCATTGG CTTTCTTACA ATAAACCTTT CCAAAATGGA ATAGCTTCTT
  TCTTTGGGGG ACATAGGGCG GGCGCTAAGG GGACATCAAG GGACGTGAGA ACATGGTGCC
  GCACTGGGGA TTCCTTTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451227	MGP_WTSI_9_46038438	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214542945					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451227	MGP_WTSI_9_46038438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141653 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	within coordinates
Rr195182	regulatory region 195182	1453 bp distal
Rr195183	regulatory region 195183	653 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1981 bp downstream
Tssr84840	transcription start site region 84840	1641 bp downstream
Tssr84841	transcription start site region 84841	1511 bp downstream
Tssr84842	transcription start site region 84842	1409 bp downstream
Tssr84843	transcription start site region 84843	1375 bp downstream
Tssr84844	transcription start site region 84844	1201 bp downstream
Tssr84845	transcription start site region 84845	1164 bp downstream
Tssr84846	transcription start site region 84846	1109 bp downstream
Tssr84847	transcription start site region 84847	447 bp downstream
Tssr84848	transcription start site region 84848	369 bp downstream
Tssr84849	transcription start site region 84849	333 bp downstream
Tssr84850	transcription start site region 84850	291 bp downstream
Tssr84851	transcription start site region 84851	256 bp downstream
Tssr84852	transcription start site region 84852	159 bp downstream
Tssr84853	transcription start site region 84853	125 bp downstream
Tssr84854	transcription start site region 84854	112 bp downstream
Tssr84855	transcription start site region 84855	92 bp downstream
Tssr84856	transcription start site region 84856	81 bp downstream
Tssr84857	transcription start site region 84857	30 bp upstream
Tssr84858	transcription start site region 84858	49 bp upstream
Tssr89313	transcription start site region 89313	380 bp upstream
Tssr89314	transcription start site region 89314	352 bp upstream
Tssr89315	transcription start site region 89315	329 bp upstream
Tssr89316	transcription start site region 89316	309 bp upstream
Tssr89317	transcription start site region 89317	300 bp upstream
Tssr89318	transcription start site region 89318	276 bp upstream
Tssr89319	transcription start site region 89319	266 bp upstream
Tssr89320	transcription start site region 89320	253 bp upstream
Tssr89321	transcription start site region 89321	228 bp upstream
Tssr89322	transcription start site region 89322	145 bp upstream
Tssr89323	transcription start site region 89323	93 bp upstream
Tssr89324	transcription start site region 89324	65 bp upstream
Tssr89325	transcription start site region 89325	40 bp upstream
Tssr89326	transcription start site region 89326	6 bp upstream
Tssr89327	transcription start site region 89327	106 bp downstream