rs214546254 SNP Detail

Summary

• ID
  rs214546254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53251597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCTAA CTTAAAATGA
  CCAAAAAGTA CATTAATTTG ATTTTTTAAA AAAATGGTCT CACGTAGCAT AGTCCATCTA
  AAATTTAATG TGTACCTTGA ACTACCAAGT GCTAGGATTA TAGGCAGGTA ACATTCTATC
  AGGGATGTGT AAGGCAAGCA TGCCGTAAAA TTCCAGTCCT GTCTGCAGGT CTGCAACTTT
  Y
  TAACGATGCT TGCTTTTTTT TTTTTTTTTT TTTTTTTTTT AAAGATCCGA TGGAATTACA
  AACACCAAGA TCTAAAAGCC TAATAAACCA AAAACCATCT GTTTCTTCCC GAATGAGCTT
  TCGGTCATCC TTTGCTTCAC TGTTCTCATT CAGACGACCT GCGAAGGAGA CTCTAAAACT
  TCAGTCTCCG AGACCAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss377604669	MGP_WTSI_9_53148402	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs214546254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377604669	MGP_WTSI_9_53148402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53251597 () rs orientation: forward

Symbol	Name	Function Class
Exph5	exophilin 5	within coordinates
Rr679004	regulatory region 679004	101 bp proximal
Tssr85124	transcription start site region 85124	334 bp upstream
Tssr85125	transcription start site region 85125	763 bp upstream
Tssr85126	transcription start site region 85126	785 bp upstream
Tssr85127	transcription start site region 85127	912 bp upstream
Tssr85128	transcription start site region 85128	930 bp upstream
Tssr85129	transcription start site region 85129	957 bp upstream
Tssr85130	transcription start site region 85130	1044 bp upstream
Tssr85131	transcription start site region 85131	1509 bp upstream