rs214546977 SNP Detail

Summary

• ID
  rs214546977
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13841629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCTCC CAGGGACGCG
  CTGGGGGATC CGATGACGTC GCTGGCTGAG TCTCTCCCTC TTCCTCCCTC CCTCCCCTCT
  CCCCCGCCCG CCCTCGCCGC GCACTCCTCC TAGTAACTTC TGTTCGGGGA GGCGCTGCCA
  GGAATAACCC GGTGCGTCCA CAGCCCGGAG GGGAGGTGGC CGCTGCGGCT CCCGCACGCC
  S
  ACAAACTGCG GCCCGGGTCC TGCGGCTCAA GCCCCAGCCT AGCGGCCCTG GCCCCCGCCC
  TGGCTCCATC TCCTAACAGT GTCCGAAAAT AAATAAATAT ATAAATAAAG ACAAGAGGAG
  CCTGGGCTGG CGGTGGGGAT CGCCTCCCTC CCTCCTCCCT CCCTCCACGC CCGCCCTCCC
  TCTGTCCTTA AGGAAATGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379498367	MGP_WTSI_10_13685691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214546977					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379498367	MGP_WTSI_10_13685691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13841629 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	within coordinates
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	143 bp upstream
Gm66890	predicted gene, 66890	228 bp downstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	190 bp upstream
Rr384171	regulatory region 384171	428 bp downstream
Rr427854	regulatory region 427854	1255 bp distal
Rr427855	regulatory region 427855	154 bp distal
Rr427856	regulatory region 427856	within coordinates
Rr427857	regulatory region 427857	382 bp proximal
Rr427858	regulatory region 427858	505 bp proximal
Tssr3141	transcription start site region 3141	226 bp upstream
Tssr92402	transcription start site region 92402	1238 bp downstream
Tssr92403	transcription start site region 92403	1071 bp downstream
Tssr92404	transcription start site region 92404	1038 bp downstream
Tssr92405	transcription start site region 92405	1010 bp downstream
Tssr92406	transcription start site region 92406	842 bp downstream
Tssr92407	transcription start site region 92407	637 bp downstream
Tssr92408	transcription start site region 92408	606 bp downstream
Tssr92409	transcription start site region 92409	573 bp downstream
Tssr92410	transcription start site region 92410	546 bp downstream
Tssr92411	transcription start site region 92411	46 bp downstream
Tssr92412	transcription start site region 92412	14 bp downstream
Tssr92413	transcription start site region 92413	within coordinates
Tssr92414	transcription start site region 92414	208 bp upstream
Tssr92415	transcription start site region 92415	289 bp upstream
Tssr92416	transcription start site region 92416	321 bp upstream
Tssr92417	transcription start site region 92417	354 bp upstream
Tssr92418	transcription start site region 92418	383 bp upstream
Tssr92419	transcription start site region 92419	1092 bp upstream
Tssr92420	transcription start site region 92420	1124 bp upstream
Tssr92421	transcription start site region 92421	1249 bp upstream
Tssr92422	transcription start site region 92422	1936 bp upstream
Tssr96784	transcription start site region 96784	235 bp upstream
Tssr96785	transcription start site region 96785	210 bp upstream
Tssr96786	transcription start site region 96786	865 bp downstream
Tssr96787	transcription start site region 96787	895 bp downstream
Tssr96788	transcription start site region 96788	936 bp downstream
Tssr96789	transcription start site region 96789	1591 bp downstream
Tssr96790	transcription start site region 96790	1748 bp downstream