rs214549351 SNP Detail

Summary

• ID
  rs214549351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113173838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTAAA ACATGGGTAT
  AGCTTGGTAA TATAAATTTT GTTTCTTATA GTTTAGGAGA CATTAAACAA GGTTTCTCTA
  TAAATCCTCT TCAGTTACTA AGATTAGAGT TCTGGGGTTG GCAAGAAGGT TCAGTAAAGG
  CACTTACTGC CATGCTATCC CAGGAATTCA CATGGTGGAA GGAGAAAACT GGCTCCCTCA
  R
  AGTTCCCTTG CTCTCCGTAT CCACGCCACC ACACTCCAGC AGCTCTGCAG CAGTGTCTTT
  CTGTTAGAAA CTTAGCCTCA GCCACTCCAC AGACTGTGAA AATCCGAACT TGCCAGACTC
  GGGTAGGCAG TGTTGTTAGC TGGCTGCGTT GGGTCAGGCC AGCAGCCACA GCTACCCTGC
  CACTTCCTTC TGGCTGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390015821	MGP_WTSI_13_113827512	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214549351					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390015821	MGP_WTSI_13_113827512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113173838 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	1778 bp distal
Gm10735	predicted gene 10735	1997 bp downstream
Mir449a	microRNA 449a	230 bp upstream
Mir449b	microRNA 449b	115 bp upstream
Mir449c	microRNA 449c	1213 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	within coordinates
Rr486471	regulatory region 486471	1915 bp distal
Rr486472	regulatory region 486472	1179 bp distal
Rr486473	regulatory region 486473	943 bp proximal
Tssr121166	transcription start site region 121166	306 bp upstream