rs214554589 SNP Detail

Summary

• ID
  rs214554589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180029331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCACCCT GCCTAGCTAC
  AGCTGCCACA ACCAGGGGAC CTCTACATGC TGCAGGCTCT GCAGAGACAG GGCCCTCCCA
  GGAATGGGAG AGTCTGGATG CTCTCTGGGG TGTTTCCACA CAGGGACAGG GCTGGTCAGG
  TCATGCCAGA GACAGACATT GTCCTGCTGA CACGGAAGAA CTGAATGTTC TTTCAGGAGC
  Y
  GGGACTGCCC TGCAGCCCCA CACCAGGTCC AAGCCCAGCC AGACCCTCTG TGCCTGCACC
  ACCTCTCCTG CAGTGGGTGT CTCCAGCTCT TTCTGTAGGT AGCCGCCTGC AGGGACACCT
  GTTCCAGGGT TCCAGCACTT TACCTGCAGG CTCACCTTGG GTGATGGTGA GTCCCCAGGC
  ATGTGAGTCT CTTCCTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356759407	MGP_WTSI_2_180122243	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214554589					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356759407	MGP_WTSI_2_180122243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180029331 () rs orientation: forward

Symbol	Name	Function Class
B230312C02Rik	RIKEN cDNA B230312C02 gene	1653 bp upstream
Cpgi12893	CpG island 12893	1692 bp distal
Cpgi12894	CpG island 12894	992 bp distal
Mir1a-1	microRNA 1a-1	1510 bp upstream
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	within coordinates
Rr572731	regulatory region 572731	1924 bp distal
Rr572732	regulatory region 572732	1691 bp distal
Rr572733	regulatory region 572733	1072 bp distal
Rr572734	regulatory region 572734	1121 bp distal
Rr572735	regulatory region 572735	337 bp distal
Rr572736	regulatory region 572736	within coordinates
Rr572737	regulatory region 572737	639 bp proximal
Rr572738	regulatory region 572738	760 bp proximal
Tssr22221	transcription start site region 22221	1921 bp downstream
Tssr22222	transcription start site region 22222	524 bp upstream
Tssr22223	transcription start site region 22223	1581 bp upstream
Tssr28102	transcription start site region 28102	775 bp upstream
Tssr28103	transcription start site region 28103	741 bp upstream