rs214560780 SNP Detail

Summary

• ID
  rs214560780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133694189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATATAAT GCAACGGGAT
  CACAGAGATC CGCCCCCAAG TGGTTCCCAG TATCAGGTAA AGATCAGGAA ATAGACGCAT
  ACACTTACAG CAGACAACCT CGCAGATCTT CTCTGTGGCT ATTAAAAAAG AAAGTAAGAG
  GAATAAGCAC AGGTCTCCTC ACTAGTCAGC TTCACATTAA AGAAAAGTTA ATGAGACAAT
  Y
  CGTGGTCATT TACTACCACA GAACCTTGGT AGCTACTACG CAAGGCTTTG TGCGTTGCCC
  TCAATGGATA AGACTCACCT CGTCCTTCAC CTTGGTTTTG TCTCCTTTAG CATCCCCTTC
  AGCCTACAAA ATGATAAAAA GACCAAAACT TGTAACCTCG GAGGCAAATC TCAGAGAACC
  GGAACTTAAC AGCAACCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363328417	MGP_WTSI_4_133522793	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214560780					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363328417	MGP_WTSI_4_133522793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133694189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15020	CpG island 15020	14 bp proximal
Hmgn2	high mobility group nucleosomal binding domain 2	within coordinates
Rr398563	regulatory region 398563	253 bp upstream
Rr601512	regulatory region 601512	553 bp proximal
Rr601513	regulatory region 601513	1762 bp proximal
Tssr39509	transcription start site region 39509	1271 bp upstream
Tssr43836	transcription start site region 43836	316 bp downstream
Tssr43837	transcription start site region 43837	357 bp downstream
Tssr43838	transcription start site region 43838	418 bp downstream
Tssr43839	transcription start site region 43839	1046 bp downstream
Tssr43840	transcription start site region 43840	1075 bp downstream
Tssr43841	transcription start site region 43841	1236 bp downstream
Tssr43842	transcription start site region 43842	1733 bp downstream