rs214563542 SNP Detail

Summary

• ID
  rs214563542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99241526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACAGTG ACTCACCTTG
  CGGATGGCAC AGATTGTAGG CGCCTATACA GGAGATCACA GAAATGGACG GATGGTGAGA
  CAGAGTCAAG AGGAGAACAG GCCTGATTTG GGGTAATTTC ATTCTCTTTC CACAATCGTT
  GAAAGGCTTA GCCCCATGAA CAATCAAAAG ATGAGTGTGT TCTCTTTCTT GCACCCTTCC
  M
  CGCTTCCTAT CTCTTCCTCT GGATAAAATT ACTTGCTGCA AGGGGTTGGA GAGATGGCTC
  CTCGGCTAGA ACTCTTACTG CTCAAGCAGA GGACACTAAT TCAGGTCCCA GCACATACAA
  GAGGCTCGCC AAGTTCAAAT AACTCCAGCT CCAGGGGATG GTCTTGGATA CCACATTCAT
  ACATATAATT TTAAATTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135614	CHEV_9_99259892	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214563542					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99241526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	768 bp distal
Esyt3	extended synaptotagmin-like protein 3	916 bp upstream
Rr198328	regulatory region 198328	1275 bp proximal
Rr206935	regulatory region 206935	725 bp distal
Tssr91051	transcription start site region 91051	921 bp upstream