rs214581542 SNP Detail

Summary

• ID
  rs214581542
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72234382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAATTTGA GATAGGACAG GCCTTTAATC
  CTCGGTGAGG ATTGAGGGGT AGCATCAAAG ATGGGAAGCA TGCACTACAA CTTTATCTGG
  AAAGAAATAA CTAGTGGGCT CTTCTGGGTA TCTGTTCCCT GTGCAGTCTC AGGTAGACTA
  C
  GTAATCTCTG AGCCTGTTTA CCCTTTGTTA CCATGACAGT ACATAACAAG AAAAAGGTTC
  AGAAGGAAAG TATGTAACCA CGTAGCCTAG CCCCAGGCCA TGCCAGGGGC CAGGTGACAC
  CAGCTATGGC TAATTGCCAA GTAAAGGAGA                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342310	CHEV_2_72242095	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214581542					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72234382 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	782 bp distal
Rr62486	regulatory region 62486	within coordinates
Rr62487	regulatory region 62487	1420 bp proximal
Tssr18342	transcription start site region 18342	1214 bp upstream
Tssr18343	transcription start site region 18343	1300 bp upstream
Tssr18344	transcription start site region 18344	1660 bp upstream