rs214590546 SNP Detail

Summary

• ID
  rs214590546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119824735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTTCG AGTGCCACCT
  GTCTGTCTGA CCCACGAATG CGCCCTGCCT AACTGCGGCT GGCTAGGCAC CCCAGAGCCT
  TCTGGATTCT GGAACGTGAG GTCTTCACCT CTGCGCCCCT TTCTGGTCGC ACCCCCCCCC
  CACGACCCCA GTCTGACATA CCCTCTCCAA AGCCACCCCG CCCCGCCCCC ACCTCACTAC
  W
  GTCAGAAGAA GAGCCAAGTC TTCCATCTAT CCCTATGTGG GCCTCAGACG AGATTTCCAA
  GGGATTTTTG GAAAGTCAAG GAGGGGGACT GTAGTTCCTT ATTCTCTCCG TGTGGAAATA
  TGGAGATACA GGAGGAGGTA ACCAGGATGG AGGAGTAGCA GATAAAAGGA GACACCCGCA
  CCCCTCCCAC ACACACACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366458583	MGP_WTSI_5_120136679	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214590546					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366458583	MGP_WTSI_5_120136679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119824735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	393 bp proximal
Cpgi16461	CpG island 16461	1218 bp proximal
Gm71505	predicted gene, 71505	1494 bp upstream
Rr619145	regulatory region 619145	82 bp distal
Rr619146	regulatory region 619146	171 bp distal
Rr619147	regulatory region 619147	within coordinates
Rr619148	regulatory region 619148	1004 bp proximal
Rr619149	regulatory region 619149	1505 bp proximal
Tbx3	T-box 3	1946 bp downstream
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	187 bp upstream