rs214593698 SNP Detail

Summary

• ID
  rs214593698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131938339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTGGGG TCACCACACC
  GTGGGGAACC ATGTTGAAGG GTCAGGTGTT AAGAAGGTTG AGAAGCACGG CTCTACACCC
  ATGCACATAT TTACAGCAGC ACTAACTGAA CTCTGTTCAA CAGGAAGAAG AGCATGGGAT
  AAAATTAGAA GGAAGAGGGG AAGGTCTGGG AGAACTAAGA GGTGGTCAGG AAGCTGAATA
  Y
  GATCAAAATA CATTGTATAC TTGTATAAAG TTCTCATCAA ATACACAAAG AAAAACAAGC
  ATACTGCTGA GTTCAAGACT AGTCTGGGCT ACATAGCAGG AGGCTATCTA AAGAAAAAGG
  AGAATGAGAG GCAGAGGGAG GAGAGAGGAG AGAAAAGAAA CTCTGAAGTT CACATGTTGG
  CAAAGGAAAA AGTCCAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355697978	MGP_WTSI_2_131922155	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	C	T	T	C	C	C	C	T	T	T	T	C	C	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214593698					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	C	T	T	C	C	C	C	T	T	T	T	C	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355697978	MGP_WTSI_2_131922155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131938339 () rs orientation: forward

Symbol	Name	Function Class
Rr38521	regulatory region 38521	1339 bp distal
Rr51777	regulatory region 51777	1990 bp proximal
Rr58489	regulatory region 58489	within coordinates
Rr397327	regulatory region 397327	1602 bp downstream
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2	within coordinates
Tssr20295	transcription start site region 20295	1675 bp downstream
Tssr26447	transcription start site region 26447	1811 bp upstream