rs214596149 SNP Detail

Summary

• ID
  rs214596149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58574297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGAAGAG CAGTCGGGTG
  CTCTAACCCA CTGAGCCATC TCACCAGCCC CAATAGTTTC TTTTTAAAAA CAGAAGTCAG
  ACAACGGCTC TAAAACTTCC TCGTGGTGTC GCTCGCCTTT AATCCCAGCA CTTGGGAGGC
  AAAGGCAGGC GGATTTCTGA GTTTCAGGAC AGCCAAGGCT ACACTGAGAA ACCCTGTCTC
  R
  GAAAAAAAAA AAACAAAAAA AACCAAAAAA CCAAAACAAA AAAACTTTCT CATATTGGGA
  ATGGCAGCAC ACACCCAAAA TACTTAGGAA TACTGACTCA GAAATATTGC CACGTTTGAG
  ATCTGCTCAA GTTTCACAAT GAAACTTGGT CTCAAAAACA GGACAAAAAC TCCCAGATTA
  GTAAGAAGAA ATGTGTCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss377713714	MGP_WTSI_9_58514821	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs214596149					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377713714	MGP_WTSI_9_58514821	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58574297 () rs orientation: forward

Symbol	Name	Function Class
A130026P03Rik	RIKEN cDNA A130026P03 gene	within coordinates
Rec114	REC114 meiotic recombination protein	within coordinates